Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
normalized counts
•
reset
1
vote
2
replies
1.1k
views
scran/scater Normalized matrix
scran
scater
normalized counts
updated 5.3 years ago by
Aaron Lun
★ 28k • written 5.3 years ago by
Radek
▴ 90
0
votes
2
replies
1.1k
views
Get normalized COUNTS Deseq2
deseq2
normalized counts
updated 5.4 years ago by
Steve Lianoglou
★ 13k • written 5.4 years ago by
anaQ
• 0
0
votes
0
replies
1.4k
views
DESeq2: Extract mean normalized log2 counts by level
normalized counts
log2
5.6 years ago
agdif
▴ 10
4
votes
2
replies
7.8k
views
DESeq2 : normalized counts
rnaseq
deseq2
normalized counts
updated 5.9 years ago by
Michael Love
42k • written 5.9 years ago by
JoannaF
▴ 10
0
votes
14
replies
4.4k
views
DESeq2 count normalization
deseq2
normalization
normalized counts
updated 6.1 years ago by
Michael Love
42k • written 6.1 years ago by
naets_matthias
• 0
1
vote
4
replies
1.5k
views
Normalized counts after fitting linear model with batch effects - edgeR
edger
batch effect
normalized counts
updated 6.3 years ago by
Ryan C. Thompson
★ 7.9k • written 6.3 years ago by
Yahan
• 0
4
votes
2
replies
1.3k
views
Normalize to additional variable (brain weight) in DESeq2
deseq2
cqn
normalization
normalized counts
updated 6.6 years ago by
Michael Love
42k • written 6.6 years ago by
mark.ebbert
• 0
2
votes
1
reply
1.0k
views
Problems with Edge R normalization in same sample but using different ref genomes.
normalized counts
grch37
grch38
r bioconductor
6.6 years ago
salvocomplicazioni1
• 0
1
vote
2
replies
1.6k
views
cn.MOPS - reporting log normalized read counts as table
cn.mops
log
normalized counts
table
updated 6.8 years ago by
Günter Klambauer
▴ 540 • written 6.8 years ago by
falk.zakrzewski
• 0
1
vote
3
replies
1.4k
views
DESeq2: Do basemean values take into account interaction effects?
deseq2
counts
normalized counts
updated 7.8 years ago by
Steve Lianoglou
★ 13k • written 7.8 years ago by
snamjoshi87
▴ 40
2
votes
2
replies
1.9k
views
Analysis of shRNA screen data
shrna
edger
deseq2
differential expression
normalized counts
7.8 years ago
Jane Merlevede
▴ 90
1
vote
6
replies
2.6k
views
Diffbind EdgeR and DESeq2 normalization
diffbind
normalized counts
7.8 years ago
GFM
▴ 20
12 results • Page
1 of 1
Recent ...
Replies
Comment: Multi-factorial, longitudinal disease progression analysis with unbalanced patie
by
Dylan.Sheerin
• 0
Thank you very much, Gordon. I'll give voomLmFit a go! And for comparisons between the cohorts I presume duplicateCorrelation with standar…
Answer: Multi-factorial, longitudinal disease progression analysis with unbalanced patie
by
Gordon Smyth
50k
Including subjectID in the design matrix always accounts for unbalanced sampling and patient variation but subjects with incomplete records…
Comment: Log-cpm values from limma
by
Gordon Smyth
50k
No, it does not mean that. `voom()` uses the design matrix, including the W covariates, to compute precision weights but not to adjust the …
Comment: Extremely small p-values using Limma for proteomic data
by
Abbey
• 0
This is the code. The only part I changed was adding the contrasts.fit as you suggested. Thanks for taking a look! ``` # Load necessary …
Comment: Extremely small p-values using Limma for proteomic data
by
James W. MacDonald
65k
Probably. I would not expect such large fold changes. But without seeing your code, who knows?
Votes
Answer: Multi-factorial, longitudinal disease progression analysis with unbalanced patie
Answer: Extremely small p-values using Limma for proteomic data
Bioconductor 3.19 is Released!
A: Volcanoplot with limma - RAW P-values or Adj.P-Values
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Awards
• All
Popular Question
to
neilzhao
▴ 30
Popular Question
to
ATpoint
★ 4.1k
Teacher
to
Michael Love
42k
Popular Question
to
Haibo Liu
• 0
Popular Question
to
HS
▴ 10
Locations
• All
Australia,
just now
United States,
13 minutes ago
WEHI, Melbourne, Australia,
27 minutes ago
United States,
1 hour ago
United States,
1 hour ago
Traffic: 443 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6